Research Publications 2005

Al-Adhami BH, Noble C, Sharaf O, Thornhill J, Doenhoff MJ, Kusel JR (2005). The role of acidic organelles in the development of schistosomula of Schistosoma mansoni and their response to signalling molecules. Parasitology Cambridge Univ Press 130: 309-322. ISSN: 0031-1820. [Abstract]
Bekkevold D, Andre C, Dahlgren TG, Clausen LAW, Torstensen E, Mosegaard H, Carvalho GR, Christensen TB, Norlinder E, Ruzzante DE (2005). Environmental correlates of population differentiation in Atlantic herring. Evolution Soc Study Evolution; 810 E 10th Street 59(12): 2656-2668. ISSN: 0014-3820. [Abstract]
Bishop CM (2005). Circulatory variables and the flight performance of birds. Journal of Experimental Biology Company of Biologists Ltd 208(9): 1695-1708. ISSN: 0022-0949. [Abstract]
Budden AE, Wright J (2005). Learning during competitive positioning in the nest: do nestlings use ideal free 'foraging' tactics?. Behavioral Ecology and Sociobiology Springer 58(3): 227-236. ISSN: 0340-5443. [Abstract]
Campbell HA, Bishop CM, Davies DA, Egginton S (2005). Recording long-term heart rate in Paranotothenia angustata using an electronic datalogger. Journal of Fish Biology Blackwell Publishing 67(4): 1150-1156. ISSN: 0022-1112. [Abstract]
Case RAJ, Hutchinson WF, Hauser L, Van Oosterhout C, Carvalho GR (2005). Macro- and micro-geographic variation in pantophysin (PanI) allele frequencies in NE Atlantic cod Gadus morhua. Marine Ecology-progress Series Inter-research 301: 267-278. ISSN: 0171-8630. [Abstract]
Chlichlia K, Schauwienold B, Kirsten C, Doenhoff MJ, Fishelson Z, Ruppel A (2005). Schistosoma japonicum reveals distinct reactivity with antisera directed to proteases mediating host infection and invasion by cercariae of S-mansoni or S-haematobium. Parasite Immunology Blackwell Publishing Ltd 27(3): 97-102. ISSN: 0141-9838. [Abstract]
Chung JS, Webster SG (2005). Dynamics of in vivo release of molt-inhibiting hormone and crustacean hyperglycemic hormone in the shore crab, Carcinus maenas. Endocrinology Endocrine Soc 146(12): 5545-5551. ISSN: 0013-7227. [Abstract]
Coast GM, Garside CS, Webster SG, Schegg KM, Schooley DA (2005). Mosquito natriuretic peptide identified as a calcitonin-like diuretic hormone in Anopheles gambiae (Giles). Journal of Experimental Biology Company of Biologists Ltd 208(17): 3281-3291. ISSN: 0022-0949. [Abstract]
Creer S, Malhotra A, Thorpe RS, Pook CE (2005). Targeting optimal introns for phylogenetic analyses in non-model taxa: experimental results in Asian pitvipers. Cladistics Blackwell Publishing 21(4): 390-395. ISSN: 0748-3007. [Abstract]
Creer S (2005). On the application of molecular barcodes in toxinological research. Toxicon Pergamon-elsevier Science Ltd 46(6): 709-710. ISSN: 0041-0101.
Croft DP, James R, Ward AJW, Botham MS, Mawdsley D, Krause J (2005). Assortative interactions and social networks in fish. Oecologia Springer 143(2): 211-219. ISSN: 0029-8549. [Abstract]
Cunningham C, Wilcockson DC, Boche D, Perry VH (2005). Comparison of inflammatory and acute-phase responses in the brain and peripheral organs of the ME7 model of prion disease. Journal of Virology Amer Soc Microbiology 79(8): 5174-5184. ISSN: 0022-538X. [Abstract]
Cunningham C, Wilcockson DC, Campion S, Lunnon K, Perry VH (2005). Central and systemic endotoxin challenges exacerbate the local inflammatory response and increase neuronal death during chronic neurodegeneration. Journal of Neuroscience Soc Neuroscience 25(40): 9275-9284. ISSN: 0270-6474. [Abstract]
D'Amato ME, Carvalho GR (2005). Population genetic structure and history of the long-tailed hake, Macruronus magellanicus, in the SW Atlantic as revealed by mtDNA RFLP analysis. Ices Journal of Marine Science Academic Press Ltd Elsevier Science Ltd 62(2): 247-255. ISSN: 1054-3139. [Abstract]
Davey AJH, Hawkins SJ, Turner GF, Doncaster CP (2005). Size-dependent microhabitat use and intraspecific competition in Cottus gobio. Journal of Fish Biology Blackwell Publishing 67(2): 428-443. ISSN: 0022-1112. [Abstract]
Dougherty MK, Muller J, Ritt DA, Zhou M, Zhou XZ, Copeland TD, Conrads TP, Veenstra TD, Lu KP, Morrison DK (2005). Regulation of raf-1 by direct feedback phosphorylation. Molecular Cell Cell Press 17(2): 215-224. ISSN: 1097-2765. [Abstract]
Fenner N, Freeman C, Reynolds B (2005). Observations of a seasonally shifting thermal optimum in peatland carbon-cycling processes; implications for the global carbon cycle and soil enzyme methodologies. Soil Biology & Biochemistry Pergamon-elsevier Science Ltd 37(10): 1814-1821. ISSN: 0038-0717. [Abstract]
Ferrer M, Golyshina OV, Plou FJ, Timmis KN, Golyshin PN (2005). A novel alpha-glucosidase from the acidophilic archaeon Ferroplasma acidiphilum strain Y with high transglycosylation activity and an unusual catalytic nucleophile. Biochemical Journal 391: 269-276. ISSN: 0264-6021. [Abstract]
Ferrer M, Golyshina OV, Chernikova TN, Khachane AN, Reyes-Duarte D, Dos Santos VAPM, Strompl C, Elborough K, Jarvis G, Neef A, Yakimov MM, Timmis KN, Golyshin PN (2005). Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora. Environmental Microbiology 7(12): 1996-2010. ISSN: 1462-2912. [Abstract]
Ferrer M, Golyshina OV, Chernikova TN, Khachane AN, dos Santos VAPM, Yakimov MM, Timmis KN, Golyshin PN (2005). Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin. Chemistry & Biology 12(8): 895-904. ISSN: 1074-5521. [Abstract]
Ferrer M, Martinez-Abarca F, Golyshin PN (2005). Mining genomes and 'metagenomes' for novel catalysts. Current Opinion in Biotechnology 16(6): 588-593. ISSN: 0958-1669. [Abstract]
Fitzsimmons CM, Schramm G, Jones FM, Chalmers IW, Hoffmann KE, Grevelding CG, Wuhrer M, Hokke CH, Haas H, Doenhoff MJ, Dunne DW (2005). Molecular characterization of omega-1: A hepatotoxic ribonuclease from Schistosoma mansoni eggs. Molecular and Biochemical Parasitology Elsevier Science Bv 144(1): 123-127. ISSN: 0166-6851.
Fox CJ, Taylor MI, Pereyra R, Villasana MI, Rico C (2005). TaqMan DNA technology confirms likely overestimation of cod (Gadus morhua L.) egg abundance in the Irish Sea: implications for the assessment of the cod stock and mapping of spawning areas using egg-based methods. Molecular Ecology Blackwell Publishing Ltd 14(3): 879-884. ISSN: 0962-1083. [Abstract]
Genner MJ, Turner GF (2005). The mbuna cichlids of Lake Malawi: a model for rapid speciation and adaptive radiation. Fish and Fisheries Blackwell Publishing Ltd 6(1): 1-34. ISSN: 1467-2960. [Abstract]
Giri RR, Takeuchi J, Ozaki H (2005). Influence of night soil contamination on activated sludge microbial communities in Bangkok, Thailand. Ecological Engineering Elsevier Science Bv 25(4): 395-404. ISSN: 0925-8574. [Abstract]
Golyshin PN (2005). Chemical biotechnology: what's new, what's next?. Current Opinion in Biotechnology 16(6): 585-587. ISSN: 0958-1669.
Gow JL, Noble LR, Rollinson D, Tchuente LAT, Jones CS (2005). High levels of selfing are revealed by a parent-offspring analysis of the medically important freshwater snail, Bulinus forskalii (Gastropoda : Pulmonata). Journal of Molluscan Studies Oxford Univ Press 71: 175-180. ISSN: 0260-1230. [Abstract]
Gubitz T, Thorpe RS, Malhotra A (2005). The dynamics of genetic and morphological variation on volcanic islands. Proceedings of the Royal Society B-biological Sciences Royal Society 272(1564): 751-757. ISSN: 0962-8452. [Abstract]
Gusewell S, Freeman C (2005). Nutrient limitation and enzyme activities during litter decomposition of nine wetland species in relation to litter N : P ratios. Functional Ecology Blackwell Publishing 19(4): 582-593. ISSN: 0269-8463. [Abstract]
Hallberg KB, Johnson DB (2005). Biological manganese removal from acid mine drainage in constructed wetlands and prototype bioreactors. Science of the Total Environment Elsevier Science Bv 338(1-2): 115-124. ISSN: 0048-9697. [Abstract]
Hallberg KB, Johnson DB (2005). Microbiology of a wetland ecosystem constructed to remediate mine drainage from a heavy metal mine. Science of the Total Environment Elsevier Science Bv 338(1-2): 53-66. ISSN: 0048-9697. [Abstract]
Hanfling B, Bolton P, Harley M, Carvalho GR (2005). A molecular approach to detect hybridisation between crucian carp (Carassius carassius) and non-indigenous carp species (Carassius spp. and Cyprinus carpio). Freshwater Biology Blackwell Publishing Ltd 50(3): 403-417. ISSN: 0046-5070. [Abstract]
Hernandez-Velazquez FD, Galindo-Sanchez CE, Taylor MI, de la Rosa-Velez J, Cote IM, Schramm Y, Aurioles-Gamboa D, Rico C (2005). New polymorphic microsatellite markers for California sea lions (Zalophus californianus). Molecular Ecology Notes Blackwell Publishing Ltd 5(1): 140-142. ISSN: 1471-8278. [Abstract]
Holmberg C, Fleck O, Hansen HA, Liu C, Slaaby R, Carr AM, Nielsen O (2005). Ddb1 controls genome stability and meiosis in fission yeast. Genes & Development Cold Spring Harbor Lab Press 19(7): 853-862. ISSN: 0890-9369. [Abstract]
Hughes RN (2005). Lessons in modularity: the evolutionary ecology of colonial invertebrates. Scientia Marina Inst Ciencias Mar Barcelona 69: 169-179. ISSN: 0214-8358. [Abstract]
Hughes RN, D'Amato ME, Bishop JDD, Carvalho GR, Craig SF, Hansson LJ, Harley MA, Pemberton AJ (2005). Paradoxical polyembryony? Embryonic cloning in an ancient order of marine bryozoans. Biology Letters Royal Society 1(2): 178-180. ISSN: 1744-9561. [Abstract]
Ilyushik E, Pryce DW, Walerych D, Riddell T, Wakeman JA, McInerny CJ, McFarlane RJ (2005). Psc3 cohesin of Schizosaccharomyces pombe: cell cycle analysis and identification of three distinct isoforms. Biological Chemistry Walter De Gruyter & Co 386(7): 613-621. ISSN: 1431-6730. [Abstract]
Johnson DB, Okibe N, Hallberg KB (2005). Differentiation and identification of iron-oxidizing acidophilic bacteria using cultivation techniques and amplified ribosomal DNA restriction enzyme analysis. Journal of Microbiological Methods Elsevier Science Bv 60(3): 299-313. ISSN: 0167-7012. [Abstract]
Johnson DB, Hallberg KB (2005). Acid mine drainage remediation options: a review. Science of the Total Environment Elsevier Science Bv 338(1-2): 3-14. ISSN: 0048-9697. [Abstract]
Johnson DB, Okibe N, Hallberg KB (2005). Differentiation and identification of iron-oxidizing acidophilic bacteria using cultivation techniques and amplified ribosomal DNA restriction enzyme analysis (vol 60, pg 299, 2005). Journal of Microbiological Methods Elsevier Science Bv 63(2): 216-217. ISSN: 0167-7012.
Johnson DB, Hallberg KB (2005). Biogeochemistry of the compost bioreactor components of a composite acid mine drainage passive remediation system. Science of the Total Environment Elsevier Science Bv 338(1-2): 81-93. ISSN: 0048-9697. [Abstract]
Jones DL, Healey JR, Willett VB, Farrar JF, Hodge A (2005). Dissolved organic nitrogen uptake by plants - an important N uptake pathway?. Soil Biology & Biochemistry Pergamon-elsevier Science Ltd 37(3): 413-423. ISSN: 0038-0717. [Abstract]
Jones DL, Shannon D, Junvee-Fortune T, Farrarc JF (2005). Plant capture of free amino acids is maximized under high soil amino acid concentrations. Soil Biology & Biochemistry Pergamon-elsevier Science Ltd 37(1): 179-181. ISSN: 0038-0717. [Abstract]
Joyce DA, Lunt DH, Bills R, Turner GF, Katongo C, Duftner N, Sturmbauer C, Seehausen O (2005). An extant cichlid fish radiation emerged in an extinct Pleistocene lake. Nature Nature Publishing Group 435(7038): 90-95. ISSN: 0028-0836. [Abstract]
Kang HJ, Freeman C, Park SS, Chun J (2005). N-Acetylglucosaminidase activities in wetlands: a global survey. Hydrobiologia Springer 532: 103-110. ISSN: 0018-8158. [Abstract]
Kang HJ, Kim SY, Fenner N, Freeman C (2005). Shifts of soil enzyme activities in wetlands exposed to elevated CO2. Science of the Total Environment Elsevier Science Bv 337(1-3): 207-212. ISSN: 0048-9697. [Abstract]
Kanse SM, Liang O, Schubert U, Haas H, Preissner KT, Doenhoff MJ, Dennis RD (2005). Characterisation and partial purification of Schistosoma mansoni egg-derived pro-angiogenic factor. Molecular and Biochemical Parasitology Elsevier Science Bv 144(1): 76-85. ISSN: 0166-6851. [Abstract]
Mahmoud HMA, Goulder R, Carvalho GR (2005). The response of epilithic bacteria to different metals regime in two upland streams: assessed by conventional microbiological methods and PCR-DGGE. Archiv Fur Hydrobiologie E Schweizerbartsche Verlags 163(3): 405-427. ISSN: 0003-9136. [Abstract]
Malhotra A, Thorpe RS (2005). Erratum to "A phylogeny of four mitochondrial gene regions suggests a revised taxonomy for Asian pitvipers (Trimeresurus and Ovophis)" (vol 32, pg 83, 2003). Molecular Phylogenetics and Evolution Academic Press Inc Elsevier Science 34(3): 680-681. ISSN: 1055-7903.
McDonald PG, Olsen PD, Cockburn A (2005). Sex allocation and nestling survival in a dimorphic raptor: does size matter?. Behavioral Ecology Oxford Univ Press Inc 16(5): 922-930. ISSN: 1045-2249. [Abstract]
McDonald PG, Olsen PD, Cockburn A (2005). Selection on body size in a raptor with pronounced reversed sexual size dimorphism: are bigger females better?. Behavioral Ecology Oxford Univ Press Inc 16(1): 48-56. ISSN: 1045-2249. [Abstract]
Mesquita N, Hanfling B, Carvalho GR, Coelho MM (2005). Phylogeography of the cyprinid Squalius aradensis and implications for conservation of the endemic freshwater fauna of southern Portugal. Molecular Ecology Blackwell Publishing Ltd 14(7): 1939-1954. ISSN: 0962-1083. [Abstract]
Mills SC, Taylor MI, Reynolds JD (2005). Benefits and costs to mussels from ejecting bitterling embryos: a test of the evolutionary equilibrium hypothesis. Animal Behaviour Academic Press Ltd Elsevier Science Ltd 70: 31-37. ISSN: 0003-3472. [Abstract]
Munks RJL, Sant'Anna MRV, Grail W, Gibson W, Igglesden T, Yoshiyama M, Lehane SM, Lehane MJ (2005). Antioxidant gene expression in the blood-feeding fly Glossina morsitans morsitans. Insect Molecular Biology Blackwell Publishing 14(5): 483-491. ISSN: 0962-1075. [Abstract]
Munks RJ, Sant'Anna MR, Grail W, Gibson W, Igglesden T, Yoshiyama M, Lehane SM, Lehane MJ (2005). Antioxidant gene expression in the blood-feeding fly Glossina morsitans morsitans. Insect Mol Biol 14(5): 483-91. ISSN: 0962-1075. [Abstract]
Nathalie F, Freeman C, Reynolds B (2005). Hydrological effects on the diversity of phenolic degrading bacteria in a peatland: implications for carbon cycling. Soil Biology & Biochemistry Pergamon-elsevier Science Ltd 37(7): 1277-1287. ISSN: 0038-0717. [Abstract]
Plenderleith M, van Oosterhout C, Robinson RL, Turner GF (2005). Female preference for conspecific males based on olfactory cues in a Lake Malawi cichlid fish. Biology Letters Royal Society 1(4): 411-414. ISSN: 1744-9561. [Abstract]
Pook CE, McEwing R (2005). Mitochondrial DNA sequences from dried snake venom: a DNA barcoding approach to the identification of venom samples. Toxicon Pergamon-elsevier Science Ltd 46(7): 711-715. ISSN: 0041-0101. [Abstract]
Pook CE, McEwing R (2005). Mitochondrial DNA sequences from dried snake venom: a DNA barcoding approach to the identification of venom samples. Toxicon 46(7): 711-5. ISSN: 0041-0101 (Print). [Abstract]
Pryce DW, Lorenz A, Smirnova JB, Loidl J, McFarlane RJ (2005). Differential activation of M26-containing meiotic recombination hot spots in Schizosaccharomyces pombe. Genetics Genetics 170(1): 95-106. ISSN: 0016-6731. [Abstract]
Reyes-Duarte D, Polaina J, Lopez-Cortes N, Alcalde M, Plou FJ, Elborough K, Ballesteros A, Timmis KN, Golyshin PN, Ferrer M (2005). Conversion of a carboxylesterase into a triacylglycerol lipase by a random mutation. Angewandte Chemie-international Edition 44(46): 7553-7557. ISSN: 1433-7851.
Ryabchenko LE, Novikov AD, Golyshin PN, Yanenko AS (2005). Sequence and structure analysis of cryptic plasmid pN30 from oil-oxidizing strain Rhodococcus erythropolis 30. Russian Journal of Genetics 41(12): 1434-1436. ISSN: 1022-7954. [Abstract]
Sirijovski N, Woolnough C, Rock J, Joss JMP (2005). NfCR1, the first non-LTR retrotransposon characterized in the Australian lungfish genome, Neoceratodus forsteri, shows similarities to CR1-like elements. Journal of Experimental Zoology Part B-molecular and Developmental Evolution Wiley-liss 304B(1): 40-49. ISSN: 1552-5007. [Abstract]
Sorgho H, Bahgat M, Poda JN, Song WJ, Kirsten C, Doenhoff MJ, Zongo I, Ouedraogo JB, Ruppel A (2005). Serodiagnosis of Schistosoma mansoni infections in an endemic area of Burkina Faso: performance of several immunological tests with different parasite antigens. Acta Tropica Elsevier Science Bv 93(2): 169-180. ISSN: 0001-706X. [Abstract]
Sowerby A, Emmett B, Beier C, Tietema A, Penuelas J, Estiarte M, Van Meeteren MJM, Hughes S, Freeman C (2005). Microbial community changes in heathland soil communities along a geographical gradient: interaction with climate change manipulations. Soil Biology & Biochemistry Pergamon-elsevier Science Ltd 37(10): 1805-1813. ISSN: 0038-0717. [Abstract]
Stallwood B, Shears J, Williams PA, Hughes KA (2005). Low temperature bioremediation of oil-contaminated soil using biostimulation and bioaugmentation with a Pseudomonas sp from maritime Antarctica. Journal of Applied Microbiology Blackwell Publishing 99(4): 794-802. ISSN: 1364-5072. [Abstract]
Sugawara T, Terai Y, Imai H, Turner GF, Koblmuller S, Sturmbauer C, Shichida Y, Okada N (2005). Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from Lakes Tanganyika and Malawi. Proceedings of the National Academy of Sciences of the United States of America Natl Acad Sciences 102(15): 5448-5453. ISSN: 0027-8424. [Abstract]
Thorpe RS, Reardon JT, Malhotra A (2005). Common garden and natural selection experiments support ecotypic differentiation in the Dominican anole (Anolis oculatus). Am Nat 165(4): 495-504. ISSN: 1537-5323 (Electronic). [Abstract]
Thorpe RS (2005). Population evolution and island biogeography. Science Amer Assoc Advancement Science 310(5755): 1778-1779. ISSN: 0036-8075.
Thorpe RS, Leadbeater DL, Pook CE (2005). Molecular clocks and geological dates: cytochrome b of Anolis extremus substantially contradicts dating of Barbados emergence. Molecular Ecology Blackwell Publishing Ltd 14(7): 2087-2096. ISSN: 0962-1083. [Abstract]
Thorpe RS, Reardon JT, Malhotra A (2005). Common garden and natural selection experiments support ecotypic differentiation in the Dominican anole (Anolis oculatus). American Naturalist Univ Chicago Press 165(4): 495-504. ISSN: 0003-0147. [Abstract]
Turner JE, Greville K, Murphy EC, Hooks MA (2005). Characterization of Arabidopsis fluoroacetate-resistant mutants reveals the principal mechanism of acetate activation for entry into the glyoxylate cycle. Journal of Biological Chemistry Amer Soc Biochemistry Molecular Biology Inc 280(4): 2780-2787. ISSN: 0021-9258. [Abstract]
Veneti Z, Bentley JK, Koana T, Braig HR, Hurst GDD (2005). A functional dosage compensation complex required for male killing in Drosophila. Science Amer Assoc Advancement Science 307(5714): 1461-1463. ISSN: 0036-8075. [Abstract]
Whiteley N, Faulkner LS (2005). Temperature influences whole-animal rates of metabolism but not protein synthesis in a temperate intertidal isopod. Physiological and Biochemical Zoology Univ Chicago Press 78(2): 227-238. ISSN: 1522-2152. [Abstract]
Wuster W, Dumbrell AJ, Hay C, Pook CE, Williams DJ, Fry BG (2005). Snakes across the Strait: trans-Torresian phylogeographic relationships in three genera of Australasian snakes (Serpentes : Elapidae : Acanthophis, Oxyuranus, and Pseudechis). Molecular Phylogenetics and Evolution Academic Press Inc Elsevier Science 34(1): 1-14. ISSN: 1055-7903. [Abstract]
Wuster W, Duarte MR, Salomao MD (2005). Morphological correlates of incipient arboreality and ornithophagy in island pitvipers, and the phylogenetic position of Bothrops insularis. Journal of Zoology Cambridge Univ Press 266: 1-10. ISSN: 0952-8369. [Abstract]
Wuster W, Ferguson JE, Quijada-Mascarenas JA, Pook CE, Salomao MD, Thorpe RS (2005). No rattlesnakes in the rainforests: reply to Gosling and Bush. Molecular Ecology Blackwell Publishing 14(11): 3619-3621. ISSN: 0962-1083.
Wuster W, Ferguson JE, Quijada-Mascarenas JA, Pook CE, Salomao MD, Thorpe RS (2005). Tracing an invasion: landbridges, refugia, and the phylogeography of the Neotropical rattlesnake (Serpentes : Viperidae : Crotalus durissus). Molecular Ecology Blackwell Publishing Ltd 14(4): 1095-1108. ISSN: 0962-1083. [Abstract]
Yakimov MM, Denaro R, Genovese M, Cappello S, D'Auria G, Chernikova TN, Timmis KN, Golyshin PN, Giluliano L (2005). Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons. Environmental Microbiology 7(9): 1426-1441. ISSN: 1462-2912. [Abstract]